Information for 6-AATTGGCAGSTTTCHY (Motif 13)

C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
Reverse Opposite:
C T G A C G T A A C T G C G T A T G C A C T G A T A C G G A T C A C G T A C T G G A T C A T G C G T C A T C G A C A G T G A C T
p-value:1e-12
log p-value:-2.764e+01
Information Content per bp:1.660
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.5 +/- 29.8bp
Average Position of motif in Background47.0 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AATTGGCAGSTTTCHY
---TGACAGGTGTCA-
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A C G T A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AATTGGCAGSTTTCHY
---TGACAGCTGTCA-
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A C G T A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:forward strand
Alignment:AATTGGCAGSTTTCHY
---TGACAGCTGTCA-
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A C G T A C G T G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:AATTGGCAGSTTTCHY
---TGACAGGTGTCA-
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A C G T A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AATTGGCAGSTTTCHY
NNTTGGCANN------
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTGGCAGSTTTCHY
GGATTGACAGGTCNTT-
 A C G T C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AATTGGCAGSTTTCHY
-CTTGGCAA-------
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AATTGGCAGSTTTCHY-
----TGCAGCTGTCCCT
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T A C G T
A C G T A C G T A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATTGGCAGSTTTCHY
--TTMACACCTT----
 C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AATTGGCAGSTTTCHY
NTATTGACAGGTNNTN-
 A C G T C G T A G T C A A G C T A C G T T A C G C T A G A G T C C G T A C T A G A T G C G A C T A C G T A C G T G T A C G C A T G A C T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T A C G T