Information for 17-TSMAGCCAGWCTT (Motif 31)

C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
Reverse Opposite:
C T G A C G T A C T A G G C T A G T A C A C G T A C T G A C T G A G T C A C G T C A T G T A G C C G T A
p-value:1e-9
log p-value:-2.152e+01
Information Content per bp:1.760
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif49.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets38.0 +/- 20.2bp
Average Position of motif in Background58.3 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TSMAGCCAGWCTT
--ATGCCAGACN-
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TSMAGCCAGWCTT
--CAGCC------
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TSMAGCCAGWCTT---
-SCAGYCADGCATGAC
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TSMAGCCAGWCTT
-BCAGACWA----
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TSMAGCCAGWCTT----
CAAATCCAGACATCACA
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TSMAGCCAGWCTT
---TGCCAA----
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TSMAGCCAGWCTT
-CCAGACAG----
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TSMAGCCAGWCTT
-CGTGCCAAG---
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TSMAGCCAGWCTT
ACTAGCCAATCA-
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TSMAGCCAGWCTT
AGGTGHCAGACA-
 C G A T A T C G G T A C C G T A A C T G G T A C G T A C C G T A A C T G C G A T A G T C A C G T A G C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T