Information for 9-AMTKTAGAGTAMM (Motif 16)

C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C
Reverse Opposite:
A C T G A C T G A C G T C G T A A G T C A C G T A G T C A C G T C G T A G T C A C G T A A C G T A C G T
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.6 +/- 34.1bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AMTKTAGAGTAMM------
--TTCNAAGTACTTNNNNN
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AMTKTAGAGTAMM------
--TTTTAAGTACTTAAATT
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AMTKTAGAGTAMM---
TCTTTCGAGGAATTTG
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AMTKTAGAGTAMM---
AATTTCAAGTGGCTTN
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AMTKTAGAGTAMM----
-ATGTACAGTAGCAAAG
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T A C G T
A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AMTKTAGAGTAMM-----
-NATTTAAGTACTTANNA
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AMTKTAGAGTAMM
---CTYRAGTGSY
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AMTKTAGAGTAMM----
-ATTTACAGTAGCAAAA
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C A C G T A C G T A C G T A C G T
A C G T G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0162.1_Sfpi1_2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AMTKTAGAGTAMM
CAAATTCCGGAACC
 A C G T C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AMTKTAGAGTAMM
-BTBRAGTGSN--
 C G T A G T C A A C G T A C G T A C G T C G T A C T A G C G T A A C T G A C G T C G T A G T A C G T A C
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T