Information for 4-CYTTGTTCTYCCR (Motif 5)

A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
Reverse Opposite:
G A T C A T C G A C T G C T A G C G T A A T C G C G T A C T G A T A G C C G T A C T G A C T A G C T A G
p-value:1e-13
log p-value:-3.136e+01
Information Content per bp:1.756
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.7 +/- 23.8bp
Average Position of motif in Background50.8 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CYTTGTTCTYCCR
YCTTTGTTCC----
 A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CYTTGTTCTYCCR
NNNTCCTTTGTTCTNNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CYTTGTTCTYCCR
TNNTCCTTTGTTCTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CYTTGTTCTYCCR
CCTTTGTTTT----
 A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CYTTGTTCTYCCR
CCATTGTTTT----
 A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CYTTGTTCTYCCR
NCCATTGTTC-----
 A C G T A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CYTTGTTCTYCCR
AACCCTTTGATCTTT--
 A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CYTTGTTCTYCCR
CCWTTGTYYB----
 A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CYTTGTTCTYCCR
CCTTTGATCTTT--
 A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CYTTGTTCTYCCR
AATCCCTTTGATCTATC-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T C G A G C T A C G T A T G C C G A T G A T C A G T C T A G C C T A G
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C A C G T