Information for 18-CAGAGATATTTATGAA (Motif 39)

G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T G T A C C G T A A C G T C G T A C G T A C G T A G A C T G T C A A C G T A T G C A C G T A T G C A C G T A C T G
p-value:1e-7
log p-value:-1.692e+01
Information Content per bp:1.918
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.0 +/- 13.0bp
Average Position of motif in Background60.9 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0150.1_Pou4f3/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGAGATATTTATGAA---
---AGTTATTAATGAGGTC
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA-
-----DGWTTTATGRCN
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA
------NTTTTACGAC
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGAGATATTTATGAA
GACAGAGATATCAGTGT-
 A C G T A C G T G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA-
-----ANTTTTACGACC
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA
------NTTTTATGAC
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA
-------TTTTATTGC
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA----
----NAATTTTACGAGNTNN
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAGAGATATTTATGAA---
-----ACATTCATGACACG
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CAGAGATATTTATGAA-
------NTTTTATTACN
 G T A C C G T A A T C G C G T A A T C G C G T A A C G T C T G A A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C