Information for 2-CAAGACAGWGTGGCAT (Motif 3)

T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
Reverse Opposite:
C T G A C G A T A C T G A G T C G T A C C G T A A T G C G C T A A T G C A C G T A C T G A C G T A G T C G A C T A C G T A C T G
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.699
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.8 +/- 26.4bp
Average Position of motif in Background43.0 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT---
---NGTAGGTTGGCATNNN
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT
-AGGNCANNGTGACCT
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAGACAGWGTGGCAT
NAGGTCACNNTGACC-
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT
-------GGTTGGCAT
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT-
CAGGTCACCGTGACCTT
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CAAGACAGWGTGGCAT
------GGTCTGGCAT
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.51
Offset:9
Orientation:forward strand
Alignment:CAAGACAGWGTGGCAT
---------TTGGCA-
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT-
--------NTTGGCANN
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAAGACAGWGTGGCAT
CCAGACAG--------
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAAGACAGWGTGGCAT---
---TGCGGAGTGGGACTGG
 T G A C G T C A C G T A T C A G G T C A T A G C C G T A A T C G C G A T A T C G A C G T A C T G C T A G T A G C G C T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G