Information for 6-CGGCGTCACG (Motif 24)

A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G
Reverse Opposite:
A T G C A C T G A C G T A C T G C G T A A G T C A T C G A G T C A G T C A C T G
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.908
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif23.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.2 +/- 25.8bp
Average Position of motif in Background38.3 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGTCACG---
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGGCGTCACG-
---AGTCACGC
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG---
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

CREB1/MA0018.2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGCGTCACG
TGACGTCA--
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G
G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG---
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGTCACG---
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGGCGTCACG---
---GGTCACGTGG
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C C G T A G T A C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G