Information for 3-KGTTGCYAGGCAACCG (Motif 3)

A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
Reverse Opposite:
A T G C A T C G A C T G G C A T A C G T A C T G A G T C A G T C G A C T C T A G A C T G G T A C C G T A G T C A A G T C G T C A
p-value:1e-12
log p-value:-2.923e+01
Information Content per bp:1.712
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif46.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets44.6 +/- 22.9bp
Average Position of motif in Background50.9 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:KGTTGCYAGGCAACCG
KGTTGCTAGGMAACA-
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-KGTTGCYAGGCAACCG
CTGTTGCTAGGS-----
 A C G T A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:KGTTGCYAGGCAACCG
-GTTGCCATGGNAAC-
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KGTTGCYAGGCAACCG
NCCGTTGCTANGNGN---
 A C G T A C G T A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--KGTTGCYAGGCAACCG
NNCGTTGCTATGGNN---
 A C G T A C G T A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:KGTTGCYAGGCAACCG
--TTTCCAGGAAATGG
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A C G T A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

STAT1/MA0137.3/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:KGTTGCYAGGCAACCG
--TTTCCAGGAAA---
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A C G T A C G T A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:KGTTGCYAGGCAACCG
-NCTTCCNGGAAGNN-
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A C G T T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------KGTTGCYAGGCAACCG-
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:KGTTGCYAGGCAACCG
--CTTCTGGGAAA---
 A C G T A C T G C A G T G A C T C A T G A G T C A G T C C T G A C T A G A C T G T G A C G T C A C G T A G T A C T A G C A T C G
A C G T A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T