p-value: | 1e-20 |
log p-value: | -4.795e+01 |
Information Content per bp: | 1.778 |
Number of Target Sequences with motif | 7.0 |
Percentage of Target Sequences with motif | 4.12% |
Number of Background Sequences with motif | 1.1 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 44.4 +/- 24.5bp |
Average Position of motif in Background | 0.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | -0.7 |
Multiplicity (# of sites on avg that occur together) | 1.14 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
PB0055.1_Rfx4_1/Jaspar
Match Rank: | 1 |
Score: | 0.80 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CCTTAGCAACGVCCTG TACCATAGCAACGGT--- |
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PB0056.1_Rfxdc2_1/Jaspar
Match Rank: | 2 |
Score: | 0.80 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CCTTAGCAACGVCCTG CCGCATAGCAACGGA--- |
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PB0054.1_Rfx3_1/Jaspar
Match Rank: | 3 |
Score: | 0.78 |
Offset: | -6 |
Orientation: | forward strand |
Alignment: | ------CCTTAGCAACGVCCTG- TGTGACCCTTAGCAACCGATTAA |
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Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer
Match Rank: | 4 |
Score: | 0.71 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CCTTAGCAACGVCCTG SCCTAGCAACAG---- |
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Rfx1/MA0509.1/Jaspar
Match Rank: | 5 |
Score: | 0.63 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----CCTTAGCAACGVCCTG GTTGCCATGGCAAC------ |
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Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer
Match Rank: | 6 |
Score: | 0.62 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----CCTTAGCAACGVCCTG TGTTKCCTAGCAACM----- |
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NFIA/MA0670.1/Jaspar
Match Rank: | 7 |
Score: | 0.59 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCTTAGCAACGVCCTG NNTTGGCANN------ |
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NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 8 |
Score: | 0.58 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | CCTTAGCAACGVCCTG -CTTGGCAA------- |
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Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer
Match Rank: | 9 |
Score: | 0.57 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | CCTTAGCAACGVCCTG------ -NTTMRCACNNNVSTGYKAANT |
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Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer
Match Rank: | 10 |
Score: | 0.54 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCTTAGCAACGVCCTG YCTTATCWVN------ |
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