Information for 1-CGGTTGCCATGGCAAC (Motif 1)

A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
Reverse Opposite:
T C A G G A C T G A C T A C T G A G T C A G T C C T G A G A C T C T A G C T A G G T A C C T G A C G T A A G T C T A G C T A C G
p-value:1e-91
log p-value:-2.098e+02
Information Content per bp:1.690
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif34.71%
Number of Background Sequences with motif220.0
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets46.3 +/- 20.2bp
Average Position of motif in Background53.0 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
CGGTTGCCATGGCAAC
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:2
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC
-KGTTGCCATGGCAAC
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACN
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:4
Score:0.95
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACG
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:6
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:CGGTTGCCATGGCAAC-
-CGTTGCCATGGCAACN
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.93
Offset:2
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
--GTTGCCATGGCAAC
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
-NGTTGCCATGGCAA-
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CGGTTGCCATGGCAAC
-GGTTGCCATGGCAA-
 A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTGCCATGGCAAC
NNCGTTGCTATGGNN--
 A C G T A T G C A T C G C T A G C G A T A G C T C A T G A G T C A G T C C T G A A G C T C T A G C T A G T G A C C T G A C T G A A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T