Information for 3-GTCKCCTAGCAAC (Motif 2)

C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C
Reverse Opposite:
T A C G A C G T A G C T C T A G T A G C A G C T G C T A C T A G A T C G T G A C C T A G T C G A G T A C
p-value:1e-49
log p-value:-1.130e+02
Information Content per bp:1.671
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif6.75%
Number of Background Sequences with motif220.7
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets49.7 +/- 21.4bp
Average Position of motif in Background45.2 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTCKCCTAGCAAC-
TGTTKCCTAGCAACM
 A C G T C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.83
Offset:3
Orientation:forward strand
Alignment:GTCKCCTAGCAAC--
---SCCTAGCAACAG
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GTCKCCTAGCAAC---
-CCGCATAGCAACGGA
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T A C G T A C G T
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---GTCKCCTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GTCKCCTAGCAAC---
-TACCATAGCAACGGT
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCKCCTAGCAAC
GTTGCCATGGCAAC
 A C G T C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCKCCTAGCAAC---
-TACCCTAGTTACCGA
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T A C G T A C G T
A C G T G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

STAT3/MA0144.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTCKCCTAGCAAC
-TTTCCCAGAAN-
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCKCCTAGCAAC-
TTGCCATGGCAACN
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GTCKCCTAGCAAC-
TTGCCATGGCAACC
 C A T G A G C T G A T C A C T G A T G C A G T C C G A T T C G A A C T G G A T C C T G A T G C A A T G C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C