Information for 9-GCTKTCCAGCACCCAA (Motif 6)

T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
Reverse Opposite:
C G A T A C G T A T C G A C T G A C T G A C G T A T C G A T G C G A C T C T A G A T C G C G T A G T A C C G T A C T A G A T G C
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.752
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 20.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCTKTCCAGCACCCAA----
----CGAAGCACACAAAATA
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

STAT3/MA0144.2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTKTCCAGCACCCAA
-TTTCCCAGAAN----
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCTKTCCAGCACCCAA
-CTGTCTGTCACCT--
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTKTCCAGCACCCAA
NGCTTTCTAGGAAN---
 A C G T T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCTKTCCAGCACCCAA
TGTTKCCTAGCAACM--
 A C G T T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCTKTCCAGCACCCAA
------TBGCACGCAA
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTKTCCAGCACCCAA
NCTGTCAATCAN----
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCTKTCCAGCACCCAA
--TGTCTGDCACCT--
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCTKTCCAGCACCCAA
NNNCTTTCCAGGAAA---
 A C G T A C G T T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCTKTCCAGCACCCAA
--TGCCCAGNHW----
 T A C G A G T C C G A T A C T G G C A T A T G C A G T C C T G A A T C G A T G C G T C A G T A C T G A C A T G C T G C A C G T A
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T