Information for 7-ACCTTGGAGAGCA (Motif 4)

C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
Reverse Opposite:
A C G T A T C G A G T C A G C T A G T C A C G T A G T C G A T C C G T A C G T A A C T G A C T G A C G T
p-value:1e-15
log p-value:-3.454e+01
Information Content per bp:1.826
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.6 +/- 24.2bp
Average Position of motif in Background45.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ACCTTGGAGAGCA--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0014.1_Esrra_1/Jaspar

Match Rank:2
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------ACCTTGGAGAGCA
NNNNATGACCTTGANTN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----ACCTTGGAGAGCA--
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTGGAGAGCA
TGACCTTGAV-----
 A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTGGAGAGCA
TGACCTTGAN-----
 A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACCTTGGAGAGCA
-CCTTTTATAGNC
 C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACCTTGGAGAGCA
AACCTTATAT----
 A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACCTTGGAGAGCA
CTGACCTTTG------
 A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACCTTGGAGAGCA
NTGACCTTGA------
 A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------ACCTTGGAGAGCA
NNNGTGACCTTTGNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T A C A G T C A C G T A C G T C A T G A C T G G T C A C T A G C T G A A C T G A T G C G T C A
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T