Information for 4-RGTGGCCATTAGAGGA (Motif 5)

C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A
Reverse Opposite:
A C G T A G T C A G T C A C G T A T G C A G C T T C G A C T G A A C G T C T A G A C T G A G T C A G T C G T C A A T G C G A T C
p-value:1e-13
log p-value:-3.203e+01
Information Content per bp:1.825
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.1 +/- 24.3bp
Average Position of motif in Background52.0 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:RGTGGCCATTAGAGGA--
---GGTCANYTGAGGWCA
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RGTGGCCATTAGAGGA-----
--TGGCCACCAGGGGGCGCTA
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RGTGGCCATTAGAGGA------
--TGGCCACCAGGTGGCACTNT
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RGTGGCCATTAGAGGA
---GGCCATTAAC---
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RGTGGCCATTAGAGGA------
--TGGCCANNNNNGGAACTGCA
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C A T G G A T C G A T C C T G A G A T C G C A T A C T G A G C T C A G T C T A G C A T G G C T A C G T A A G T C C G A T C T A G A T G C G C T A

SPIB/MA0081.1/Jaspar

Match Rank:6
Score:0.54
Offset:10
Orientation:forward strand
Alignment:RGTGGCCATTAGAGGA-
----------AGAGGAA
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:RGTGGCCATTAGAGGA
----BCMATTAG----
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:RGTGGCCATTAGAGGA
---GNCTATAAAAGG-
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RGTGGCCATTAGAGGA--
NNGAGGTTACTNNAGGTCA
 A C G T C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RGTGGCCATTAGAGGA--
--GGGTTACTANAGGTCA
 C T A G T A C G A C G T A C T G A C T G A G T C A G T C C G T A A G C T A G C T T C G A A T C G C G T A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A