Information for 2-AGYGTCCTCTGCTSTC (Motif 2)

G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
Reverse Opposite:
A C T G C T G A T A C G T C G A A T C G A T G C G T C A A C T G C T G A T A C G A C T G C T G A G T A C C T A G G T A C C G A T
p-value:1e-20
log p-value:-4.620e+01
Information Content per bp:1.723
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.7 +/- 20.2bp
Average Position of motif in Background40.0 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGYGTCCTCTGCTSTC-
--TGACCTCTGACCCCN
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C A C G T
A C G T A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGYGTCCTCTGCTSTC
--TGACCTTTGCCCTA
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGYGTCCTCTGCTSTC--
TAGCGCCCCCTGGTGGCCA
 A C G T G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

HINFP/MA0131.2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGYGTCCTCTGCTSTC
CAACGTCCGCGG-----
 A C G T G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGYGTCCTCTGCTSTC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGYGTCCTCTGCTSTC
--TGACCTTTGACCTC
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGYGTCCTCTGCTSTC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGYGTCCTCTGCTSTC-
--TGACCTTTGCCCTAN
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGYGTCCTCTGCTSTC
--TGACCTTTGCCCCA
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGYGTCCTCTGCTSTC-
--TGWCCTCARNTGACC
 G C T A C A T G A G T C A C T G A G C T A G T C A G T C A G C T A G T C A C G T T A C G A T G C A G C T A T G C A G C T A G T C A C G T
A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C