Information for 10-GCAGCAGGGTAAC (Motif 15)

A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T G T C A A G T C A G T C A T G C A C G T A T C G A G T C A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.500e+01
Information Content per bp:1.937
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.0 +/- 19.7bp
Average Position of motif in Background62.8 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGGGTAAC
CACAGCAGGGGG--
 A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGGTAAC
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCAGCAGGGTAAC---
-----AGGGTAACAGC
 A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGGTAAC
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGGTAAC
GAGCACAGCAGGACA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGGGTAAC
DCHCAGCAGGRGGCC
 A C G T A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGGGTAAC
DCTCAGCAGG-----
 A C G T A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGGGTAAC
CGCAGCTGCG----
 A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCAGCAGGGTAAC--
-GAGAACCGAAACTG
 A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C A C G T A C G T
A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGGGTAAC
ANCAGCTG------
 A C G T A C T G A G T C C G T A A C T G A T G C C G T A T A C G A C T G A C T G A C G T C G T A C G T A A G T C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T