Information for 3-MTGAASAAWAGMC (Motif 6)

G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T C G A T A C G T A C G T A T G C A C G T A C G T A G T C C G T A A C T G
p-value:1e-12
log p-value:-2.816e+01
Information Content per bp:1.858
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 25.0bp
Average Position of motif in Background23.4 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:MTGAASAAWAGMC
--GAACAATGGN-
 G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---MTGAASAAWAGMC-
NNNNNGAACAATTGANN
 A C G T A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--MTGAASAAWAGMC--
TAGTGAACAATAGATTT
 A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---MTGAASAAWAGMC-
TCACGGAACAATAGGTG
 A C G T A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--MTGAASAAWAGMC--
AGAAGAACAAAGGACTA
 A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--MTGAASAAWAGMC--
ATAAGAACAAAGGACTA
 A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:MTGAASAAWAGMC
--RAACAATGGN-
 G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:MTGAASAAWAGMC
--GAACAATGG--
 G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----MTGAASAAWAGMC-----
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-MTGAASAAWAGMC--
AATGAACAATGGAATT
 A C G T G T A C A C G T A C T G C G T A C G T A A T C G C G T A T G C A C G T A G T C A A C T G G T C A A G T C A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T