Information for 13-CAGAGGCAAC (Motif 28)

A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G C G A T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.970
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets40.3 +/- 18.6bp
Average Position of motif in Background39.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGAGGCAAC---
--AAGGCAAGTGT
 A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGCAAC
ATTGCCTGAGGCAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGCAAC
ANTGCCTGAGGCAAN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

SPIB/MA0081.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGAGGCAAC
-AGAGGAA--
 A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAGAGGCAAC
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGAGGCAAC
MTGATGCAAT
 A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGCAAC
AGCCTCAGGCA--
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGCAAC
AGCCTCAGGCA--
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGAGGCAAC
ATGATGCAAT
 A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

ATF4/MA0833.1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGAGGCAAC-
GGATGATGCAATA
 A C G T A C G T A G T C C G T A A C T G C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A