Information for 20-TYSAGGCAAG (Motif 42)

A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G G T A C A G T C A G C T A T C G T C G A C G T A
p-value:1e-6
log p-value:-1.541e+01
Information Content per bp:1.821
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.7 +/- 27.1bp
Average Position of motif in Background31.7 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:TYSAGGCAAG---
--AAGGCAAGTGT
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TYSAGGCAAG--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TYSAGGCAAG----
--AGGTCAAGGTCA
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TYSAGGCAAG
TNNGGGCAG-
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TYSAGGCAAG----
----NTCAAGGTCA
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TYSAGGCAAG----
----BTCAAGGTCA
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TYSAGGCAAG----
--AGGTCAAGGTCA
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

FOS::JUN/MA0099.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TYSAGGCAAG
-TGAGTCA--
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G
A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TYSAGGCAAG------
------CAAGGHCANV
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TYSAGGCAAG
--TTGCCAAG
 A C G T A G C T A T G C C T G A C T A G A C T G A G T C C G T A C G T A A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G