Information for 12-GAGTCAAAGT (Motif 29)

A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
Reverse Opposite:
C G T A G T A C A C G T A C G T A C G T A T C G C T G A G T A C A C G T A G T C
p-value:1e-8
log p-value:-2.027e+01
Information Content per bp:1.884
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets55.9 +/- 23.9bp
Average Position of motif in Background51.9 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCAAAGT
GAAAGTGAAAGT
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PRDM1/MA0508.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GAGTCAAAGT--
AGAAAGTGAAAGTGA
 A C G T A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T A C G T A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GAGTCAAAGT-----
GGGGTCAAAGTCCAAT
 A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGTCAAAGT
CGGTTTCAAA--
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCAAAGT
TGAGTCA----
 A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGTCAAAGT
NATTCAAAT-
 A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTCAAAGT
GAAAGTGAAAGT
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTCAAAGT
AAAAGTCAA---
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCAAAGT
ATGASTCATH--
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
T G C A A C G T A C T G C G T A T A G C C G A T G T A C C G T A A C G T G T C A A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTCAAAGT
GGAAGTGAAAST
 A C G T A C G T A C T G C G T A A C T G A G C T A T G C C G T A C G T A C G T A A C T G A C G T
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T