Information for 2-RCWCYCWGTGTGSACA (Motif 17)

C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
Reverse Opposite:
C G A T T A C G G C A T T A G C T A G C G T C A A T G C G T C A T G A C C G T A A T C G C T A G C T A G C G T A C A T G G A C T
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.614
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif273.3
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets54.6 +/- 28.5bp
Average Position of motif in Background47.4 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RCWCYCWGTGTGSACA----
---NTNTATGTGCACATNNN
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RCWCYCWGTGTGSACA
----CGTGGGTGGTCC
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RCWCYCWGTGTGSACA
-----CTTTGT-----
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:RCWCYCWGTGTGSACA-
-----CAGTGTGGTCGC
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RCWCYCWGTGTGSACA
----CCTTTGTT----
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:RCWCYCWGTGTGSACA
----CCWTTGTYYB--
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RCWCYCWGTGTGSACA
ACTTCCTGTT------
 C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RCWCYCWGTGTGSACA
AGGVNCCTTTGT-----
 A C G T C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--RCWCYCWGTGTGSACA
TNTCCTGCTGTGNNG---
 A C G T A C G T C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--RCWCYCWGTGTGSACA
TCNCCTGCTGNGNNN---
 A C G T A C G T C T G A G T A C G C A T G A T C A G T C T A G C C G A T A C T G C A G T A T C G A C G T A T C G A T C G C G T A A T G C G C T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T