Information for 3-GAGGCCCGGGACG (Motif 3)

A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
Reverse Opposite:
A G T C A C T G A C G T A T G C A G T C A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C
p-value:1e-12
log p-value:-2.904e+01
Information Content per bp:1.929
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.7 +/- 23.7bp
Average Position of motif in Background56.6 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAGGCCCGGGACG-
CAGGCCNNGGCCNN
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGCCCGGGACG
-AGGCCTNG----
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGCCCGGGACG
-AGGCCTAG----
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGCCCGGGACG
GAGSCCGAGC---
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GAGGCCCGGGACG
---GGGCGGGACC
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

HES5/MA0821.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GAGGCCCGGGACG
-TGGCACGTGCCG
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGGCCCGGGACG
--GGCGCGCT---
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAGGCCCGGGACG-
GTGCCACGCGACTG
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:forward strand
Alignment:GAGGCCCGGGACG-
----CCAGGAACAG
 A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G A C G T
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCCGGGACG
ACATGCCCGGGCAT
 A C G T A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A C T G A T C G C G T A G T A C C T A G
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T