Information for 5-CCTTCGTAAA (Motif 23)

A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A G T C A C T G C G T A C G T A A C T G A T C G
p-value:1e-6
log p-value:-1.491e+01
Information Content per bp:1.962
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 27.8bp
Average Position of motif in Background65.9 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CCTTCGTAAA--
--GTCGTAAAAA
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCTTCGTAAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXD12/MA0873.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCTTCGTAAA--
-AGTCGTAAAAA
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCTTCGTAAA--
-GCTCGTAAAAA
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCTTCGTAAA--
-GGTCGTAAAAT
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCTTCGTAAA----
AAACCTCGTAAAATTT
 A C G T A C G T A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCTTCGTAAA---
-GGTCGTAAAATT
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCTTCGTAAA--
--GTCGTAAAAT
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCTTCGTAAA--
-GGTCGTAAAAA
 A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCTTCGTAAA-----
TTAGGTCGTAAAATTTC
 A C G T A C G T A T G C A G T C A C G T A C G T A G T C A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C