Information for 7-CAAGCCYGACTSC (Motif 13)

G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
Reverse Opposite:
T C A G A T C G T C G A A C T G C A G T A T G C C T G A A C T G A C T G A G T C A G C T A C G T A C T G
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.714
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif153.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets51.8 +/- 24.8bp
Average Position of motif in Background48.9 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAGCCYGACTSC
GTCATGCHTGRCTGS
 A C G T A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CAAGCCYGACTSC
NGCANTCATGCGTGACG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAAGCCYGACTSC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

KLF5/MA0599.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAGCCYGACTSC
---GCCCCGCCCC
 G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CAAGCCYGACTSC
TGCAGTCATGCGTGACG--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAAGCCYGACTSC
-ATGCCAGACN--
 G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAAGCCYGACTSC
CNAGGCCT------
 A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAAGCCYGACTSC-
CAGGCCNNGGCCNN
 G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGCCYGACTSC
NNGGCCACGCCTTTN---
 A C G T A C G T A C G T A C G T A C G T G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAAGCCYGACTSC
---GCCCCACCCA
 G T A C G T C A T C G A T C A G A G T C A G T C A G C T A T C G G T C A A G T C A G C T T A G C A G T C
A C G T A C G T A C G T T C A G T G A C G A T C T G A C G T A C C T G A T A G C A G T C A G T C G C T A