Information for 3-TTTTATAGCC (Motif 10)

A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
Reverse Opposite:
C A T G A C T G A G T C G C A T C T G A A G C T C G T A C G T A C T G A T G C A
p-value:1e-11
log p-value:-2.569e+01
Information Content per bp:1.666
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.56%
Number of Background Sequences with motif585.7
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets55.8 +/- 26.6bp
Average Position of motif in Background48.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGCC-
TTTTATGGCTN
 A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TTTTATAGCC
CCTTTTATAGNC
 A C G T A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGCC
TTTAATTGCN
 A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATAGCC---
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.79
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAGCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.79
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAGCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATAGCC
NTTTTATTACN
 A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTTTATAGCC
TTTTATTGC-
 A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATAGCC--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATAGCC
NTTTTATGAC-
 A C G T A C G T G A C T G C A T G C A T T C G A G A C T C G T A T C A G T G A C G T A C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T