Information for 3-CCCGCCAGSKGGC (Motif 6)

A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C T G C A A T G C G A T C G A C T T C A G A T C G G T A C C T A G T A C G T C A G
p-value:1e-11
log p-value:-2.599e+01
Information Content per bp:1.648
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif420.5
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets51.7 +/- 27.8bp
Average Position of motif in Background49.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCCGCCAGSKGGC-------
GCCASCAGGGGGCGCYVNNG
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCCGCCAGSKGGC--
-CCGCCCAAGGGCAG
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCCGCCAGSKGGC-
--TGCCCNGGGGCA
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCAGSKGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCGCCAGSKGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCCGCCAGSKGGC-
--TGCCCTNGGGCA
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCCGCCAGSKGGC-
--TGCCCTNGGGCA
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T
A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCCGCCAGSKGGC--
-TTGCCCTAGGGCAT
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C A C G T A C G T
A C G T C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCGCCAGSKGGC
---AACAGATGGC
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCGCCAGSKGGC
-VNAVCAGCTGGC
 A G T C A T G C A G T C A C T G A T G C A G T C C T G A C A T G T A C G A C G T A C T G A C T G A G T C
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C