Information for 2-GCCAATTWGATAAAAG (Motif 4)

A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
Reverse Opposite:
A G T C G C A T G A C T C G A T A C G T G C T A C G A T A G T C G C A T G T C A C G T A A G C T A C G T C T A G C T A G A T G C
p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.703
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.1 +/- 24.9bp
Average Position of motif in Background41.3 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTWGATAAAAG
ACTCCTAATTAGTCGT---
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCAATTWGATAAAAG
AGCCAATCGG-------
 A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTWGATAAAAG
CGCGCTAATTAGGTATC--
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C A C G T A C G T

PH0155.1_Prrx2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTWGATAAAAG
AAAGCTAATTAGCGAAA--
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A A C G T A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCCAATTWGATAAAAG
AANCGCTAATTAGCNNN---
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T A C G T A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCCAATTWGATAAAAG
CACCGCTAATTAGNNGN---
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCAATTWGATAAAAG
TGCCAA-----------
 A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0092.1_Lhx2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCCAATTWGATAAAAG
NNNNNCTAATTAGTTTA---
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCAATTWGATAAAAG
GCCAATTAGC------
 A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCAATTWGATAAAAG
-CCAATTAG-------
 A T C G A G T C A G T C C G T A C T G A G A C T C A G T C G T A T A C G C G T A C A G T C G T A G C T A C G T A C G T A T C A G
A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T