Information for 12-GCAWGCASRCAMG (Motif 21)

A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C T G A G T C A T C G A C G T A C T G A G T C C G A T A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.404e+01
Information Content per bp:1.874
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 26.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAWGCASRCAMG---
AGCGGCACACACGCAA
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAWGCASRCAMG--
SCAGYCADGCATGAC
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAWGCASRCAMG
--TBGCACGCAA-
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAWGCASRCAMG---
CGAAGCACACAAAATA
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCAWGCASRCAMG---
-----AAGGCAAGTGT
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCAWGCASRCAMG
-----CACGCA--
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAWGCASRCAMG
GCGCATGCGCAC---
 A C G T A C G T A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAWGCASRCAMG
--AGCCACTCAAG
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAWGCASRCAMG---
GCAGCCAAGCGTGACN
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCAWGCASRCAMG-
----CCAGACRSVB
 A C T G A G T C C G T A G C T A A C T G A G T C C G T A T A G C C T A G A G T C C G T A G T A C A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C