Information for 1-RRAGGYCAAAGKCCAN (Motif 1)

T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
Reverse Opposite:
A C T G A G C T T C A G T C A G G T C A A G T C A G C T A G C T A C G T T C A G T C A G G T A C G A T C G A C T A G T C A G C T
p-value:1e-81
log p-value:-1.876e+02
Information Content per bp:1.591
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif13.00%
Number of Background Sequences with motif486.9
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets47.9 +/- 24.4bp
Average Position of motif in Background50.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
AGAGTCCAAAGTCCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RRAGGYCAAAGKCCAN
CANAGNNCAAAGTCCA-
 A C G T T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN-
-GGGGTCAAAGTCCAAT
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-GAGGTCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.83
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-GGGGTCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-GAGGTCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-GGGGTCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-TAGGGCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
-GGGGTCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:forward strand
Alignment:RRAGGYCAAAGKCCAN
GTAGGGCAAAGGTCA-
 T C G A T C A G C T G A C T A G C A T G A G T C A G T C C G T A C T G A C T G A A C T G C A G T A G T C A G T C T C G A T G A C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T