Information for 20-GCTGGCAGGCATT (Motif 36)

A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
Reverse Opposite:
G T C A G T C A A C G T A C T G A T G C A G T C A C G T A C T G A G T C A G T C G T C A A C T G A G T C
p-value:1e-7
log p-value:-1.810e+01
Information Content per bp:1.805
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.3 +/- 35.9bp
Average Position of motif in Background36.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAGGCATT
VBTGWCAGCB---
 A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCTGGCAGGCATT
GGTGYTGACAGS----
 A C G T A C G T A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGCAGGCATT
GGTTGGCAT-----
 A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGCAGGCATT
AGGTGNCAGACAG-
 A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTGGCAGGCATT
CTTGGCAA-----
 A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGCAGGCATT
TNNGGGCAG-----
 A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCTGGCAGGCATT
---NACAGGAAAT
 A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTGGCAGGCATT
-TTGACAGC----
 A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGCAGGCATT
ARNTGACA------
 A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTGGCAGGCATT
AGGTGHCAGACA--
 A C G T A C T G T A G C A C G T A C T G C T A G A G T C C G T A A C T G A T C G T A G C G T C A C A G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T