Information for 12-WGATGGKTTARTK (Motif 24)

C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
Reverse Opposite:
G T C A C G T A A G T C A C G T C G T A C G T A G T A C A G T C A G T C C G T A A C G T A G T C C G A T
p-value:1e-9
log p-value:-2.218e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 25.4bp
Average Position of motif in Background16.4 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0125.1_Obox5_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-WGATGGKTTARTK---
NANAGGGATTAATTATN
 A C G T C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-WGATGGKTTARTK
ATGATKGATGRC--
 A C G T C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-WGATGGKTTARTK---
TGAAGGGATTAATCATC
 A C G T C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-WGATGGKTTARTK---
TGTAGGGATTAATTGTC
 A C G T C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:WGATGGKTTARTK
---GGGATTANN-
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:WGATGGKTTARTK
---GGGATTAA--
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:WGATGGKTTARTK
--NGGGATTA---
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:WGATGGKTTARTK
--VRGGATTARN-
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WGATGGKTTARTK
-TATTGTTTATT-
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:WGATGGKTTARTK
----GGATTAGC-
 C G T A A C T G C G T A A C G T A C T G C T A G C A T G A C G T A C G T C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T