Information for 20-CCAGAAATCCGAT (Motif 45)

T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
Reverse Opposite:
G T C A A C G T G A T C T A C G A T C G G T C A C G A T A G C T A G C T A T G C A C G T A C T G A T C G
p-value:1e-7
log p-value:-1.615e+01
Information Content per bp:1.717
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif24.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets61.7 +/- 16.3bp
Average Position of motif in Background53.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCAGAAATCCGAT
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAGAAATCCGAT
ATGCCAGACN------
 A C G T A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAATCCGAT
GGCCATAAATCA---
 A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCAGAAATCCGAT--
---GWAAYHTGAKMC
 T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCAGAAATCCGAT
CCAGACRSVB---
 T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGAAATCCGAT
GCCATAAATCA---
 A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAGAAATCCGAT-
GACAGAGATATCAGTGT
 A C G T A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAATCCGAT
GGCCATAAATCA---
 A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAGAAATCCGAT
GGCCATAAATCAC--
 A C G T A C G T T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T

ETV3/MA0763.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCAGAAATCCGAT
---CACTTCCGGT
 T A G C G T A C C G T A A T C G C T G A C T G A C G T A A C G T A T G C A T G C C A T G T C G A A C G T
A C G T A C G T A C G T A G T C T C G A A G T C C G A T C A G T G T A C G T A C C T A G C T A G A G C T