Information for 1-CTGCMAGGCAGAG (Motif 2)

G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
Reverse Opposite:
T G A C A G C T A T G C C G A T A T C G G A T C G T A C C G A T A C T G C T A G A T G C G T C A C A T G
p-value:1e-12
log p-value:-2.842e+01
Information Content per bp:1.679
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif360.8
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets48.9 +/- 25.6bp
Average Position of motif in Background51.4 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGCMAGGCAGAG
---CCAGGAACAG
 G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGCMAGGCAGAG----------
---YCAGGCWCAGTACCAGGCTC
 G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGCMAGGCAGAG
AGGTGNCAGACAG--
 A C G T A C G T G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGCMAGGCAGAG
NCTTCCNGGAAGNN
 A C G T G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTGCMAGGCAGAG
-TTCCNGGAAG--
 G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
A C G T G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CTGCMAGGCAGAG-
----GAGSCCGAGC
 G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTGCMAGGCAGAG
SCTGTCAVTCAV--
 A C G T G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CTGCMAGGCAGAG
CTTTGTTATGCAAAT
 A C G T A C G T G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CTGCMAGGCAGAG-
----ATGCCAGACN
 G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CTGCMAGGCAGAG
AGGTGHCAGACA---
 A C G T A C G T G T A C A C G T A T C G G A T C T G A C G C T A A C T G C A T G T A G C G C T A T A C G C T G A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T