Information for 8-RTCTTTRTTAAAA (Motif 18)

C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A
Reverse Opposite:
G A C T A G C T G A C T C A G T G T C A C T G A A G C T T G C A G T C A C T G A A C T G C T G A A G T C
p-value:1e-10
log p-value:-2.344e+01
Information Content per bp:1.672
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif42.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets57.7 +/- 22.2bp
Average Position of motif in Background54.4 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0129.1_Glis2_2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:RTCTTTRTTAAAA--
-TCTTTANTAATANN
 C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T A C G T
A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RTCTTTRTTAAAA-
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RTCTTTRTTAAAA-
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RTCTTTRTTAAAA
-YCTTTGTTCC--
 C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RTCTTTRTTAAAA----
--CCGTATTATAAACAA
 C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PB0001.1_Arid3a_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RTCTTTRTTAAAA----
GGGTTTAATTAAAATTC
 C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RTCTTTRTTAAAA
-CCTTTGTT----
 C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RTCTTTRTTAAAA-
ATTTCCTTTGATCTATA
 A C G T A C G T A C G T C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RTCTTTRTTAAAA-
AATCCCTTTGATCTATC
 A C G T A C G T A C G T C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---RTCTTTRTTAAAA-
NNTTCCTTTGATCTANA
 A C G T A C G T A C G T C T A G A G C T A G T C A G C T A C G T A C G T C T G A A G C T A C G T G T C A C T G A C T G A C G T A A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A