Information for 7-CCTGTAATTA (Motif 9)

A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A
Reverse Opposite:
A C G T C G T A C G T A C G A T A C G T G T C A A G T C C G T A A C T G T A C G
p-value:1e-9
log p-value:-2.122e+01
Information Content per bp:1.844
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif84.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets42.2 +/- 29.1bp
Average Position of motif in Background49.6 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0022.1_Dlx3/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCTGTAATTA------
NNNGGTAATTATNGNGN
 A C G T A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

MEOX2/MA0706.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CCTGTAATTA--
--AGTAATTAAC
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T
A C G T A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

VAX2/MA0723.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CCTGTAATTA-
---NTAATTAG
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T
A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G

VAX1/MA0722.1/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CCTGTAATTA-
---NTAATTAG
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T
A C G T A C G T A C G T C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G

PH0023.1_Dlx4/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCTGTAATTA------
GTCGGTAATTATNGNGN
 A C G T A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PDX1/MA0132.2/Jaspar

Match Rank:6
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CCTGTAATTA-
---GTAATTAG
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T
A C G T A C G T A C G T T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G

PH0055.1_Hoxa7_2/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CCTGTAATTA----
TNCCATTAATTACTNC
 A C G T A C G T A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T A C G T A C G T
A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

PH0061.1_Hoxb6/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCTGTAATTA------
NNNGTAATTACNNATA
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCTGTAATTA--
--GCTAATTAAC
 A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T
A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PH0062.1_Hoxb7/Jaspar

Match Rank:10
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCTGTAATTA----
TNNCATTAATTANTNC
 A C G T A C G T A T G C A G T C C G A T A C T G C A G T G T C A G C T A A C G T A C G T T C G A A C G T A C G T A C G T A C G T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C