Information for 5-TTYATYACTG (Motif 4)

A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
Reverse Opposite:
A G T C C G T A C T A G A C G T C T A G C T G A A G C T C T G A C G T A C T G A
p-value:1e-11
log p-value:-2.682e+01
Information Content per bp:1.771
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif345.1
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets50.4 +/- 26.4bp
Average Position of motif in Background51.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTYATYACTG
NTTTTATTACN-
 A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTYATYACTG
NTTTTATGAC--
 A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTYATYACTG-------
-CAATCACTGGCAGAAT
 A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTYATYACTG--
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTYATYACTG
NTTTTACGAC--
 A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTYATYACTG--
NNGTTTTACGACTTTA
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTYATYACTG--
NNNTTTTACGACNTTN
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTYATYACTG
TTTTATTGC--
 A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTYATYACTG
TTTTATGGCTN
 A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTYATYACTG--
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T T C G A A G C T G A T C C G T A A G T C A C G T C T A G A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T