Information for 3-TAATGGTGATCAAAAD (Motif 6)

A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
Reverse Opposite:
G A C T A C G T A C G T A C G T A C G T A C T G C G T A A C G T G A T C C G T A A T G C A G T C C G T A A C G T A C G T C T G A
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.829
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 28.2bp
Average Position of motif in Background61.4 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
TAATGATGATCACTA-
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
-TATGCWAATBAV---
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
-WATGCAAATGAG---
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
----GGTAATAAAAA-
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD-
-TAAGGTAATAAAATTA
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A A C G T
A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
--------ATTAAA--
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
-----GCAATAAAAA-
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD
CAAAAGTAAACAAAG-
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TAATGGTGATCAAAAD-
-AAAGGTAATAAAATTT
 A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A A C G T
A C G T C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TAATGGTGATCAAAAD
GKTAATGR----------
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G A T C G G C A T C T A G C G T A C G A T T G A C C G T A C G T A C G T A C G T A C G T A
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T