Information for 2-ATTTTATKGC (Motif 3)

G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C
Reverse Opposite:
C T A G G A T C G T A C T C G A G A C T G C T A C T G A G T C A C G T A C A G T
p-value:1e-24
log p-value:-5.678e+01
Information Content per bp:1.672
Number of Target Sequences with motif107.0
Percentage of Target Sequences with motif13.51%
Number of Background Sequences with motif1988.3
Percentage of Background Sequences with motif4.26%
Average Position of motif in Targets48.8 +/- 25.9bp
Average Position of motif in Background49.7 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:ATTTTATKGC
NTTTTATGAC
 G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:ATTTTATKGC--
-TTTTATGGCTN
 G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:ATTTTATKGC
-TTTTATTGC
 G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:ATTTTATKGC-
NTTTTATTACN
 G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--ATTTTATKGC----
NAATTTTATTACCNNN
 A C G T A C G T G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-ATTTTATKGC-
DGWTTTATGRCN
 A C G T G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---ATTTTATKGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:ATTTTATKGC
TTTTTATTGC
 G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---ATTTTATKGC---
TNAATTTTATTACCTN
 A C G T A C G T A C G T G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--ATTTTATKGC----
NAATTTTATTACCTNN
 A C G T A C G T G T C A G C A T A C G T A G C T C G A T C T G A A G C T C A T G C T A G G A T C A C G T A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A