Information for 6-GGCGTCCAAT (Motif 6)

A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A C T G C G T A A T G C C A T G A G T C A G T C
p-value:1e-10
log p-value:-2.468e+01
Information Content per bp:1.873
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets63.0 +/- 22.8bp
Average Position of motif in Background47.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGCGTCCAAT---
---AGCCAATCGG
 A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GGCGTCCAAT-
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

E2F1/MA0024.3/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCGTCCAAT
TTTGGCGCCAAA-
 A C G T A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCGTCCAAT--
ACTAGCCAATCA
 A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGCGTCCAAT---
AAATGGACCAATCAG
 A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GGCGTCCAAT--
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGCGTCCAAT--
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0094.1_Zfp128_1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGCGTCCAAT--
TCTTTGGCGTACCCTAA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGCGTCCAAT---
-----CCAATTAA
 A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

ZBTB7A/MA0750.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCGTCCAAT--
GGCGACCACCGA
 A C T G A C T G G A T C A T C G C G A T A G T C A G T C G T C A G T C A A C G T A C G T A C G T
A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A