Information for 9-CCAATTGGCA (Motif 27)

G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A
Reverse Opposite:
C G A T C A T G T G A C A G T C C G T A C G T A G A C T C G A T C T A G C T A G
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.837
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif127.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets53.4 +/- 25.1bp
Average Position of motif in Background51.2 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CCAATTGGCA--
--NNTTGGCANN
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----CCAATTGGCA--
ACNNCTAATTAGNNNN
 A C G T A C G T A C G T A C G T G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CCAATTGGCA
----TTGGCA
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CCAATTGGCA--
---NTTGGCANN
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CCAATTGGCA
CCGATTGGCT
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCAATTGGCA-
--GGTTGGCAT
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCAATTGGCA-
---CTTGGCAA
 G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PH0127.1_Nobox/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTGGCA--
GNTNNCTAATTAGNNCG
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G

PH0109.1_Nkx1-1/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGCA---
TGCGCTAATTAGTGGGA
 A C G T A C G T A C G T A C G T G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0007.1_Barx1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCAATTGGCA---
AAAGTAATTAGTGAAT
 A C G T A C G T A C G T G A T C A G T C C G T A C T G A A C G T A C G T A C T G A C T G G T A C C G T A A C G T A C G T A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T