Information for 16-GCCAAATGGTTGAGTG (Motif 20)

A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G
Reverse Opposite:
A G T C G T C A G T A C A C G T A T G C G T C A C G T A A G T C G T A C C G T A A G C T A C G T A G C T C T A G A C T G G T A C
p-value:1e-9
log p-value:-2.082e+01
Information Content per bp:1.767
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 24.8bp
Average Position of motif in Background51.4 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCAAATGGTTGAGTG
GGAAAAATTGTTAGGAA
 A C G T A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GCCAAATGGTTGAGTG--
--------BTBRAGTGSN
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:GCCAAATGGTTGAGTG---
---------TTGAGTGSTT
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCAAATGGTTGAGTG
--AAAATTGTTATGAA
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G
A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GCCAAATGGTTGAGTG---
--------CTTGAGTGGCT
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:GCCAAATGGTTGAGTG--
--------CTYRAGTGSY
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.56
Offset:9
Orientation:forward strand
Alignment:GCCAAATGGTTGAGTG---
---------TTRAGTGSYK
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCCAAATGGTTGAGTG--
-NAAANTTATTGAANCAN
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T
A C G T G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCAAATGGTTGAGTG-
AATCAATTGTTCCGCTA
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCCAAATGGTTGAGTG------
-----NTNNTTAAGTGGTTANN
 A C T G T G A C G A T C C T G A C G T A C T G A A C G T A C T G C T A G A C G T A C G T A T C G C G T A A C T G A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G