Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-190 | -4.378e+02 | 0.0000 | 393.0 | 53.54% | 4470.0 | 9.99% | motif file (matrix) |
svg |
2 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-178 | -4.103e+02 | 0.0000 | 392.0 | 53.41% | 4800.9 | 10.73% | motif file (matrix) |
svg |
3 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-158 | -3.644e+02 | 0.0000 | 380.0 | 51.77% | 5082.9 | 11.36% | motif file (matrix) |
svg |
4 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-125 | -2.901e+02 | 0.0000 | 388.0 | 52.86% | 6672.4 | 14.91% | motif file (matrix) |
svg |
5 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-99 | -2.296e+02 | 0.0000 | 255.0 | 34.74% | 3318.7 | 7.42% | motif file (matrix) |
svg |
6 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-72 | -1.663e+02 | 0.0000 | 207.0 | 28.20% | 2936.9 | 6.56% | motif file (matrix) |
svg |
7 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-27 | -6.363e+01 | 0.0000 | 124.0 | 16.89% | 2463.9 | 5.51% | motif file (matrix) |
svg |
8 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-22 | -5.139e+01 | 0.0000 | 360.0 | 49.05% | 14114.5 | 31.54% | motif file (matrix) |
svg |
9 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-17 | -3.978e+01 | 0.0000 | 223.0 | 30.38% | 7783.3 | 17.39% | motif file (matrix) |
svg |
10 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-16 | -3.721e+01 | 0.0000 | 373.0 | 50.82% | 16024.7 | 35.81% | motif file (matrix) |
svg |
11 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-13 | -3.194e+01 | 0.0000 | 249.0 | 33.92% | 9687.0 | 21.64% | motif file (matrix) |
svg |
12 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-9 | -2.087e+01 | 0.0000 | 40.0 | 5.45% | 792.7 | 1.77% | motif file (matrix) |
svg |
13 |
| TATA-Box(TBP)/Promoter/Homer | 1e-8 | -2.041e+01 | 0.0000 | 126.0 | 17.17% | 4455.0 | 9.95% | motif file (matrix) |
svg |
14 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-8 | -2.019e+01 | 0.0000 | 165.0 | 22.48% | 6389.6 | 14.28% | motif file (matrix) |
svg |
15 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-6 | -1.427e+01 | 0.0000 | 170.0 | 23.16% | 7244.8 | 16.19% | motif file (matrix) |
svg |
16 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-5 | -1.340e+01 | 0.0000 | 12.0 | 1.63% | 124.6 | 0.28% | motif file (matrix) |
svg |
17 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.188e+01 | 0.0001 | 23.0 | 3.13% | 477.5 | 1.07% | motif file (matrix) |
svg |
18 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-5 | -1.159e+01 | 0.0002 | 125.0 | 17.03% | 5198.2 | 11.61% | motif file (matrix) |
svg |
19 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-4 | -1.052e+01 | 0.0005 | 81.0 | 11.04% | 3092.8 | 6.91% | motif file (matrix) |
svg |
20 |
| NFY(CCAAT)/Promoter/Homer | 1e-3 | -8.864e+00 | 0.0026 | 45.0 | 6.13% | 1520.5 | 3.40% | motif file (matrix) |
svg |
21 |
| Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-3 | -8.395e+00 | 0.0039 | 36.0 | 4.90% | 1149.0 | 2.57% | motif file (matrix) |
svg |
22 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-3 | -7.854e+00 | 0.0064 | 282.0 | 38.42% | 14531.3 | 32.47% | motif file (matrix) |
svg |
23 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-3 | -7.288e+00 | 0.0108 | 100.0 | 13.62% | 4418.3 | 9.87% | motif file (matrix) |
svg |
24 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-2 | -6.203e+00 | 0.0307 | 39.0 | 5.31% | 1444.8 | 3.23% | motif file (matrix) |
svg |
25 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.775e+00 | 0.0452 | 85.0 | 11.58% | 3835.3 | 8.57% | motif file (matrix) |
svg |
26 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -5.712e+00 | 0.0463 | 109.0 | 14.85% | 5138.1 | 11.48% | motif file (matrix) |
svg |
27 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-2 | -5.099e+00 | 0.0823 | 11.0 | 1.50% | 272.8 | 0.61% | motif file (matrix) |
svg |
28 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.032e+00 | 0.0848 | 105.0 | 14.31% | 5037.3 | 11.26% | motif file (matrix) |
svg |
29 |
| ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.016e+00 | 0.0848 | 27.0 | 3.68% | 973.6 | 2.18% | motif file (matrix) |
svg |
30 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.897e+00 | 0.0906 | 70.0 | 9.54% | 3166.0 | 7.07% | motif file (matrix) |
svg |
31 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -4.864e+00 | 0.0906 | 58.0 | 7.90% | 2539.9 | 5.68% | motif file (matrix) |
svg |
32 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -4.835e+00 | 0.0906 | 77.0 | 10.49% | 3550.0 | 7.93% | motif file (matrix) |
svg |
33 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -4.776e+00 | 0.0930 | 91.0 | 12.40% | 4316.3 | 9.64% | motif file (matrix) |
svg |
34 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -4.684e+00 | 0.0990 | 91.0 | 12.40% | 4332.6 | 9.68% | motif file (matrix) |
svg |
35 |
| CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer | 1e-2 | -4.623e+00 | 0.1022 | 19.0 | 2.59% | 633.6 | 1.42% | motif file (matrix) |
svg |