Information for 7-AATTGCTTTATGG (Motif 5)

C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
Reverse Opposite:
G A T C A T G C G T C A C G A T T C G A C G T A C G T A C T A G A G T C C G T A C G T A A C G T A G C T
p-value:1e-12
log p-value:-2.961e+01
Information Content per bp:1.783
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets31.0 +/- 23.4bp
Average Position of motif in Background53.7 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGCTTTATGG
NNNTTAATTGGTTTTT--
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AATTGCTTTATGG-
---TGATTTATGGC
 C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AATTGCTTTATGG--
---TGATTTATGGCC
 C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGCTTTATGG
GNNTTAATTGGTTGTT--
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AATTGCTTTATGG--
---TGATTTATGGCC
 C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------AATTGCTTTATGG
ATNNACTAATTACTTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AATTGCTTTATGG--
---DGWTTTATGRCN
 C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGCTTTATGG
NNATNAATTGTTTNN---
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATTGCTTTATGG
TAATTGATTA----
 A C G T C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATTGCTTTATGG
-ATTGTTA-----
 C T G A C G T A G C A T A C G T C T A G A G T C A C G T C G A T A C G T C G T A A C G T A T C G C T A G
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T