Information for 6-AWTAGGGCCATGT (Motif 4)

C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
Reverse Opposite:
G T C A A T G C G T C A A C G T A C T G A C T G A G T C A G T C G A T C A C G T C G T A G C T A A G C T
p-value:1e-13
log p-value:-3.072e+01
Information Content per bp:1.816
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.5 +/- 25.9bp
Average Position of motif in Background49.6 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AWTAGGGCCATGT
--CAAGGHCANV-
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AWTAGGGCCATGT
--TRAGGTCA---
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AWTAGGGCCATGT----
-------CCATGTGCTT
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AWTAGGGCCATGT
ATCAAGGTCA---
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AWTAGGGCCATGT
AAYTAGGTCA---
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AWTAGGGCCATGT
----AGGTCA---
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AWTAGGGCCATGT-
AGAGCGGGGTCAAGTA
 A C G T A C G T C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AWTAGGGCCATGT--
---GCNGCCATCTTG
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AWTAGGGCCATGT---
------KCCACGTGAC
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C

USF2/MA0526.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AWTAGGGCCATGT----
------GTCATGTGACC
 C T G A C G A T A C G T C G T A C A T G A C T G A C T G G T A C G T A C C G T A A C G T A T C G C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C