Information for 5-CTGTWGTAAACTA (Motif 3)

T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
Reverse Opposite:
A C G T C G T A T C A G C G A T A C G T C A G T C G T A G A T C C G T A C T G A A T G C C G T A A C T G
p-value:1e-17
log p-value:-3.981e+01
Information Content per bp:1.717
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.54%
Number of Background Sequences with motif155.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets42.7 +/- 25.1bp
Average Position of motif in Background51.7 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGTWGTAAACTA-----
-AGCTGTTAACTAGCCGT
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGTWGTAAACTA
-NGYCATAAAWCH
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0038.1_Hlx/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGTWGTAAACTA---
-TGTAATTAATTATGG
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A A C G T A C G T A C G T
A C G T C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGTWGTAAACTA-
TAAAGTCGTAAAATAG
 A C G T A C G T T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTGTWGTAAACTA
--GTCGTAAAAT-
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGTWGTAAACTA--
CAAGGTCGTAAAATCTT
 A C G T A C G T T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTGTWGTAAACTA
--GCAATAAAA--
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTGTWGTAAACTA
--GTCGTAAAAA-
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGTWGTAAACTA
--GTCATAAAAN-
 T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGTWGTAAACTA--
TAAGGTCGTAAAATCCT
 A C G T A C G T T G A C C G A T T A C G A G C T G C A T C T A G A C G T G C T A C G T A C G T A A G T C C G A T G T C A A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T