Information for 1-GGCMATAAAA (Motif 1)

C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A
Reverse Opposite:
G C A T C A G T C G A T C G A T C T G A A G C T C A T G C T A G A G T C G A T C
p-value:1e-202
log p-value:-4.652e+02
Information Content per bp:1.682
Number of Target Sequences with motif449.0
Percentage of Target Sequences with motif61.17%
Number of Background Sequences with motif5871.7
Percentage of Background Sequences with motif13.12%
Average Position of motif in Targets49.3 +/- 23.9bp
Average Position of motif in Background49.7 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-GGCMATAAAA
AAGCCATAAAA
 A C G T C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:GGCMATAAAA
-GCAATAAAA
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.96
Offset:1
Orientation:forward strand
Alignment:GGCMATAAAA-
-GTCATAAAAN
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GGCMATAAAA-
GGTAATAAAAA
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GGCMATAAAA--
NGYCATAAAWCH
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---GGCMATAAAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--GGCMATAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GGCMATAAAA-
-CCAATAAAAA
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGCMATAAAA
NCYAATAAAA
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GGCMATAAAA-
-GCAATAAAAA
 C T A G T C A G G A T C G T A C T C G A A G C T G C T A G C T A G T C A C G T A A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A