Information for 5-TTTTTATGGCAGT (Motif 6)

A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
Reverse Opposite:
G C T A G T A C C A G T C T A G G T A C A G T C C G T A C A G T C T G A C G T A C G T A C G T A T G C A
p-value:1e-13
log p-value:-3.030e+01
Information Content per bp:1.749
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif98.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets48.3 +/- 24.7bp
Average Position of motif in Background53.2 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
-TTTTATGGCTN-
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTATGGCAGT
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
NTTTTATGAC---
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATGGCAGT
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
-TTTTATTGC---
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
NTTTTATTACN--
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
TTTTTATTGC---
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
NTTTTATTGG---
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTATGGCAGT-
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTTTATGGCAGT
-TTTTATTRGN--
 A C G T A C G T A C G T A C G T A G C T G T C A A C G T C T A G A C T G A G T C G C T A C A T G C A G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T