Information for 6-ADGGCACGCAGCCAGG (Motif 15)

C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T A C T G A C T G A G T C A C G T A T C G T G A C A T C G A C G T A C T G A T G C A G T C G C T A A G C T
p-value:1e-9
log p-value:-2.129e+01
Information Content per bp:1.813
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 18.8bp
Average Position of motif in Background52.3 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG
-TGGCAGNCTGCCAG-
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG
TTGGCANNNTGCCAAG
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ADGGCACGCAGCCAGG
-TGGCACCATGCCAA-
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG--
---SCAGYCADGCATGAC
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG
-------BCAGACWA-
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG
-------CCAGACAG-
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ADGGCACGCAGCCAGG---
YCAGGCWCAGTACCAGGCTC
 A C G T C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ADGGCACGCAGCCAGG
GTAGGTCACTGGGTCA--
 A C G T A C G T C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:ADGGCACGCAGCCAGG-
-------CCAGACRSVB
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ADGGCACGCAGCCAGG
-TBGCACGCAA-----
 C T G A C G A T A C T G A T C G A G T C G T C A A T G C A C T G T A G C C G T A A C T G G T A C A G T C C G T A A C T G A T C G
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T