Information for 5-CAGACTTGTG (Motif 13)

A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
Reverse Opposite:
G A T C G T C A A T G C G T C A T G C A C T A G A C G T A G T C G A C T A C T G
p-value:1e-9
log p-value:-2.149e+01
Information Content per bp:1.843
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif40.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets43.1 +/- 29.4bp
Average Position of motif in Background44.9 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTGTG
CCAGACRSVB-
 A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTGTG
BCAGACWA---
 A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTGTG
CCAGACAG---
 A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CAGACTTGTG-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CAGACTTGTG
ATGCCAGACN----
 A C G T A C G T A C G T A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGACTTGTG-----
-AAAATTGTTATGAA
 A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGACTTGTG
TTGACTTTT-
 A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGACTTGTG-----
GGAAAAATTGTTAGGAA
 A C G T A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGACTTGTG
CCTCACCTG--
 A C G T A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGACTTGTG--
--RTCATGTGAC
 A G T C C T G A A C T G G T C A A G T C A C G T A C G T A T C G A C G T C T A G A C G T A C G T
A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C