Information for 8-TGTGTGTCAGGMA (Motif 9)

A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
Reverse Opposite:
A G C T A C G T A T G C T G A C C G A T A T C G C G T A T A G C G C T A T A G C G C T A T G A C C G T A
p-value:1e-16
log p-value:-3.822e+01
Information Content per bp:1.692
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.0 +/- 23.8bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTGTGTCAGGMA
TGAGTGACAGSC-
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGTCAGGMA
NTGATTGACAGN--
 A C G T A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGTCAGGMA
BTGABTGACAGS--
 A C G T A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TGTGTGTCAGGMA
---CTGTCTGG--
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGTGTGTCAGGMA
-VBSYGTCTGG--
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGTGTGTCAGGMA
---NTGTCAN---
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGTCAGGMA---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGTGTGTCAGGMA
--VBTGWCAGCB-
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTGTGTCAGGMA-
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TGTGTGTCAGGMA-
----GGTCTGGCAT
 A C G T A C T G C G A T A C T G C G A T A T C G C G A T A T G C G C T A A C T G T A C G T G C A T C G A A C G T
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T